Selected Publications

KK Dey, C.J. Hsiao, M. Stephens. Visualizing the structure of RNA-seq expression data using grade of membership models. PLoS Genetics. 2017. 13(3): e1006599.

KK Dey, D. Xie, M. Stephens. A new Sequence logo plot to highlight enrichment and depletion. submitted.

KK Dey, M. Stephens. CorShrink : an adaptive strategy for shrinking correlations. In preparation.

KK Dey, H. Al-Asadi, J. Novembre, M. Stephens. Inference and visualization of DNA damage patterns using a grade of membership model. In preparation.

KK Dey, S Bhattacharya . A brief tutorial on transformation based Markov Chain Monte Carlo and optimal scaling of the additive transformation. Brazilian Journal of Probability and Statistics. 2017. Vol. 31, No. 3, 569–617.

KK Dey, S Bhattacharya. On geometric ergodicity of additive and multiplicative transformation-based Markov Chain Monte Carlo in high dimensions. Brazilian Journal of Probability and Statistics. 2016. Vol. 30, No. 4, 570–613.

AL Tarca, M Lauria, M Unger, E Bilal, S Boue, KK Dey, J Hoeng et al. Strengths and limitations of microarray-based phenotype prediction: lessons learned from the IMPROVER Diagnostic Signature Challenge. Bioinformatics. 2013. 29(22):2892-9.

Other Publications

KK Dey, S Bhattacharya . A Brief Review of Optimal Scaling of the Main MCMC Approaches and Optimal Scaling of Additive TMCMC Under Non-Regular Cases. Accepted. Brazilian Journal of Probability and Statistics. 2017.

B Karmakar, K Dhara, KK Dey, A Basu, AK Ghosh. Tests for statistical significance of a treatment effect in the presence of hidden sub-populations. Statistical Methods & Applications.March 2015, Volume 24, Issue 1, pp 97-119.

KK Dey, S Bhattacharya. On Single Variable Transformation Approach to Markov Chain Monte Carlo. JSM Proceedings. 2014.

S Pradhan, P Patra, S Mitra, KK Dey, S Basu, S Chandra, P Palit, A Goswami. Copper Nanoparticle (CuNP) Nanochain Arrays with a Reduced Toxicity Response: A Biophysical and Biochemical Outlook on Vigna radiata. J. Agric. Food Chem, 2015, 63 (10), pp 2606 - 2617.

S Mitra, P Patra, S Pradhan, N Debnath, KK Dey, S Sarkar, D Chattopadhyay, A Goswami. Microwave synthesis of ZnO@mSiO2 for detailed antifungal mode of action study: Understanding the insights into oxidative stress. Journal of Colloid and Interface Science, Volume 444, 15 April 2015, Pages 97-108.

SR Choudhury, A Basu, KK Dey, T Nag, A Goswami. Toxicological Evaluation of Antimicrobially Potent Sulfur Nanoparticles Against Biochemical, Histopathological, and Behavioral Properties in Mice. Proceedings of the Zoological Society. June 2015, Volume 68, Issue 1, pp 64-73.

S Pradhan, P Patra, S Mitra, KK Dey, S Jain, S Sarkar, S Roy, P Palit, A Goswami. Manganese Nanoparticles: Impact on Non-nodulated Plant as a Potent Enhancer in Nitrogen Metabolism and Toxicity Study both in Vivo and in Vitro. J. Agric. Food Chem., 2014, 62 (35), pp 8777-8785.

P Nandy, M Unger, C Zechner, KK Dey, H Koeppl. Learning diagnostic signatures from microarray data using L1-regularized logistic regression. Systems Biomedicine. 1 (4), 2013.

S Pradhan, P Patra, S Das, S Chandra, S Mitra, KK Dey, S Akbar, P Palit, A Goswami. Photochemical Modulation of Biosafe Manganese Nanoparticles on Vigna radiata: A Detailed Molecular, Biochemical, and Biophysical Study. Environ. Sci. Technol., 2013, 47 (22), pp 13122-13131.

SR Choudhury, KK Dey, S Bera, A Goswami. Colloidal stability and coagulation kinetics study of different sized sulphur nanoparticles. Journal of Experimental Nanoscience, 8 (3), 2013.

Dissertation

KK Dey. On ergodic behaviour of Additive Transformation based Markov Chain Monte Carlo. Masters Dissertation Thesis. ISI Kolkata (under Prof. S. Bhattacharya)