softwares

The following is a list of softwares I have developed over the recent years-

CountClust

• R package (with C.J. Hsiao and M. Stephens)

• Title : Clustering and Visualizing RNA-Seq Expression Data using Grade of Membership Models : Bioc Version, Github Version

• top 20 % in less than 2 years on Bioc with > 5000 downloads

Logolas

• R package (with D. Xie and M. Stephens)

• Title : Flexible and Customized Logo Plots using symbols, alphabets, numbers and alphanumeric strings : Bioc Version Github Version

• top 5 % in less than 1.5 years on Bioc with > 5000 downloads

CorShrink

• R package (with M. Stephens)

• Title: R package for adaptive correlation and covariance matrix shrinkage. Github Version, Project Page

aRchaic

• R/python software interface (with H. Al-Asadi)

• Title : Exploration, clustering, visualization and classification of DNA damage patterns. Github Version, Project Page

methClust

• R package

• Title: Grade of Membership clustering in methylation data. Github Version

tmcmcR

• R package (with S. Bhattacharya)
• Title : Trasnformation based Markov Chain Monte Carlo Github Version, tmcmcR vignette