Logo plot representation of an MFF file.

Source: R/archaic_view.R

Creates a logo plot representation of the probability distribution of the different mismatch features - mismatch, flanking bases, strand break and position of mismatch - for a single MFF (.csv) file.

archaic_view(
  file,
  logo.control = list(),
  background = "modern",
  title = NULL,
  output_file = NULL
)

Arguments

file

a MismatchFeatureFormat (MFF) .csv file.
logo.control

The control parameters for the logo plot representation of the sample. Check the input parameters of damageLogo5() for the control parameters.
background

if equals "modern", as in the default, compares enrichment of mismatch features against a modern background - else uses a background with equal probability of all mismatch features.
title

The name of the sample. If not provided, defaults to the filename.
output_file

The filename (with path) of the constructed logo plot.

Value

Creates a logo plot of the mismatch features for a single MFF file.